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  5. Pir_g12845

Pir_g12845


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12845

Target Alias Description ECC score Gene Family Method Actions
AT2G40830 RHC1A RING-H2 finger C1A 0.03 OrthoFinder output from all 47 species
AT3G19950 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G08139 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g111359 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g14792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33056.t1 Aspi01Gene33056 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0051.g031438 No alias not classified & original description: CDS=1-1353 0.02 OrthoFinder output from all 47 species
Ceric.15G074200.1 Ceric.15G074200 not classified & original description: pacid=50639479... 0.02 OrthoFinder output from all 47 species
Ceric.27G002200.1 Ceric.27G002200 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.34G007400.1 Ceric.34G007400 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000227.13 RHC1A No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.7 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g01509 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g07739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06048 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os05g40980.1 LOC_Os05g40980 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
MA_8499g0020 CIP8 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g17850.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
Nbi_g11583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03871 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g10220 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g36158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g06797 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002229 No alias not classified & original description: CDS=1-1332 0.06 OrthoFinder output from all 47 species
Sam_g27709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc04g009170.3.1 Solyc04g009170 E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc09g074460.3.1 CIP8, Solyc09g074460 E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g08969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 203 245
IPR039525 RNF126-like_zinc-ribbon 7 38
No external refs found!