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  5. Pir_g13488

Pir_g13488


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g13488

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00063460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Adi_g080178 No alias GARP subgroup PHL transcription factor & original... 0.05 OrthoFinder output from all 47 species
Aev_g08301 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10098 PHL1 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ala_g12852 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g14535 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g01625 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g19840 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G027900.1 Ceric.21G027900 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g34786 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g23417 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48326 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01005342001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
GSVIVT01036717001 APL, WDY RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os02g14490.1 LOC_Os02g14490 Putative Myb family transcription factor At1g14600... 0.04 OrthoFinder output from all 47 species
LOC_Os08g33750.1 LOC_Os08g33750 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Lfl_g01284 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_1432g0010 No alias Protein PHOSPHATE STARVATION RESPONSE 1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Ore_g08018 KAN2 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17498 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g05575 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g09092 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo405704 KAN4, ATS RNA biosynthesis.transcriptional activation.MYB... 0.05 OrthoFinder output from all 47 species
Solyc02g080740.3.1 Solyc02g080740 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g051060.4.1 Solyc06g051060 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g47326 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013758_P003 APL, WDY, Zm00001e013758 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e021698_P001 KAN2, Zm00001e021698 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e033757_P002 Zm00001e033757 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e040203_P001 KAN2, Zm00001e040203 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 87 137
IPR025756 Myb_CC_LHEQLE 202 239
No external refs found!