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  5. Pir_g13524

Pir_g13524


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g13524

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Adi_g004506 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035684 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036817 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18957 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31466.t1 Aspi01Gene31466 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.04 OrthoFinder output from all 47 species
Azfi_s0035.g025575 CRR2 not classified & original description: CDS=1-1563 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.02 OrthoFinder output from all 47 species
Azfi_s0136.g050953 No alias not classified & original description: CDS=1-2220 0.03 OrthoFinder output from all 47 species
Azfi_s0405.g068372 No alias not classified & original description: CDS=1-2844 0.03 OrthoFinder output from all 47 species
Azfi_s0474.g072983 No alias not classified & original description: CDS=1-2562 0.03 OrthoFinder output from all 47 species
Cba_g34546 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.02 OrthoFinder output from all 47 species
Ceric.34G063200.1 Ceric.34G063200 not classified & original description: pacid=50623126... 0.03 OrthoFinder output from all 47 species
Dac_g08179 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32204 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015233001 EMB2261 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58330.1 LPA66, LOC_Os02g58330 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g04814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07796 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g36408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11781 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g11796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13570 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57972 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63498 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63637 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05183 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61518 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011578 OTP84 not classified & original description: CDS=1-2682 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022190 No alias not classified & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023739 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Sam_g04999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25159 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g46568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g51436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 181 204
IPR002885 Pentatricopeptide_repeat 282 303
IPR002885 Pentatricopeptide_repeat 79 102
IPR002885 Pentatricopeptide_repeat 309 355
IPR002885 Pentatricopeptide_repeat 411 458
IPR002885 Pentatricopeptide_repeat 105 151
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 478 508
No external refs found!