Pir_g14080

Description : component *(bL35c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006536 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g14080

Target	Alias	Description	ECC score	Gene Family Method
AT2G24090	No alias	Ribosomal protein L35	0.05	OrthoFinder output from all 47 species
Adi_g032989	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g18654	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aop_g18112	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g00423	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ceric.15G044500.1	Ceric.15G044500	component *(bL35c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cre04.g217932	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dac_g26648	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g43056	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dde_g06179	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g03085	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01012574001	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_16123	No alias	component psRPL35 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os06g43900.1	LOC_Os06g43900	component psRPL35 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g34881	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_181338g0010	No alias	component psRPL35 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp5g05850.1	No alias	component psRPL35 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Msp_g20481	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ore_g08410	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c22_13420V3.1	Pp3c22_13420	Ribosomal protein L35	0.02	OrthoFinder output from all 47 species
Ppi_g18684	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014110	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g19900	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Smo444022	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc07g006000.3.1	Solyc07g006000	component psRPL35 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Spa_g24771	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e037448_P001	Zm00001e037448	component psRPL35 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0050992	dimethylallyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0050993	dimethylallyl diphosphate metabolic process	IEP	HCCA
MF	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021137	Ribosomal_L35	64	122

External Links

No external refs found!

Pir_g14080

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation