1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g14481

Pir_g14481


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g14481

Target Alias Description ECC score Gene Family Method Actions
Ala_g16579 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19009 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35869 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07004 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010932 REME1 not classified & original description: CDS=1-1479 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062299 OSB3 ssDNA-binding protein *(OSB) & original description: CDS=94-1002 0.04 OrthoFinder output from all 47 species
Cba_g05286 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G019000.1 Ceric.02G019000 not classified & original description: pacid=50585115... 0.04 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.03 OrthoFinder output from all 47 species
Dac_g04600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g21408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06096 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g21324 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os06g08650.1 LOC_Os06g08650 Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
Len_g04342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05415 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18512 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427854g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Msp_g11358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15839 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g17003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43670 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g55132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59290 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05031 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g06463 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12995 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g22744 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23280 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 787 831
IPR032867 DYW_dom 1051 1119
IPR002885 Pentatricopeptide_repeat 325 354
IPR002885 Pentatricopeptide_repeat 832 853
IPR002885 Pentatricopeptide_repeat 396 419
IPR002885 Pentatricopeptide_repeat 297 323
IPR002885 Pentatricopeptide_repeat 865 895
IPR002885 Pentatricopeptide_repeat 197 219
IPR002885 Pentatricopeptide_repeat 600 624
IPR002885 Pentatricopeptide_repeat 902 924
IPR002885 Pentatricopeptide_repeat 524 572
IPR002885 Pentatricopeptide_repeat 726 774
IPR002885 Pentatricopeptide_repeat 424 470
IPR002885 Pentatricopeptide_repeat 625 673
No external refs found!