Pir_g16082


Description : tRNA adenosine-methyltransferase *(TRM13) & original description: none


Gene families : OG0006177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006177_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g16082
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
Aob_g11192 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.02 OrthoFinder output from all 47 species
Cba_g16808 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g61750.1 LOC_Os03g61750 tRNA adenosine-methyltransferase (TRM13) 0.02 OrthoFinder output from all 47 species
Lfl_g30723 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
Ore_g34020 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species
Sam_g52586 No alias tRNA adenosine-methyltransferase *(TRM13) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR007871 Methyltransferase_TRM13 177 466
IPR022776 TRM13/UPF0224_CHHC_Znf_dom 41 65
IPR021721 Znf_CCCH-type_TRM13 7 34
No external refs found!