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  5. Pir_g16719

Pir_g16719 (CLPP6, NCLPP1, NCLPP6)


Aliases : CLPP6, NCLPP1, NCLPP6

Description : proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0006579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g16719
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
AT1G11750 CLPP6, NCLPP1, NCLPP6 CLP protease proteolytic subunit 6 0.06 OrthoFinder output from all 47 species
Adi_g021569 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ala_g37589 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Als_g13136 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Aob_g11501 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aop_g14482 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Cre06.g299650 NCLPP1, CLPP5, NCLPP5 ATP-dependent Clp protease proteolytic subunit 6,... 0.02 OrthoFinder output from all 47 species
Dac_g04527 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.07 OrthoFinder output from all 47 species
Dde_g10453 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.1 OrthoFinder output from all 47 species
Ehy_g00383 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Len_g09909 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
MA_55906g0010 CLPP6, NCLPP1, NCLPP6 proteolytic core component ClpP1/3-6 of chloroplast... 0.03 OrthoFinder output from all 47 species
Msp_g02713 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ore_g15241 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ore_g40969 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ppi_g06239 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015340 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sam_g07340 No alias proteolytic core component *(ClpP1/3-6) of chloroplast... 0.05 OrthoFinder output from all 47 species
Sam_g40789 No alias proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species
Smo90346 CLPP6, NCLPP1, NCLPP6 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Tin_g31246 CLPP6, NCLPP1, NCLPP6 proteolytic core component *(ClpP1/3-6) of chloroplast... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 86 259
No external refs found!