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  5. Pir_g17973

Pir_g17973


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g17973
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT3G62690 ATL5 AtL5 0.05 OrthoFinder output from all 47 species
Adi_g051114 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g060420 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ala_g08587 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g28153 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aob_g32159 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g57707 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene12542.t1 Aspi01Gene12542 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene20771.t1 Aspi01Gene20771 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene22449.t1 Aspi01Gene22449 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene39573.t1 Aspi01Gene39573 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene52668.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0056.g034025 No alias not classified & original description: CDS=511-789 0.04 OrthoFinder output from all 47 species
Ceric.09G083500.1 Ceric.09G083500 not classified & original description: pacid=50586830... 0.05 OrthoFinder output from all 47 species
Dac_g03534 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22839 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g10960 ATL31, CNI1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g24499 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g30092 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os01g20930.1 ATL3, LOC_Os01g20930 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g15120.1 ATL6, LOC_Os02g15120 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os05g36310.1 LOC_Os05g36310 RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g14676 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_10436028g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_105610g0010 RHA3A no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_177169g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g16915 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g41609 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g04891 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ppi_g21936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012209 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc12g087840.1.1 Solyc12g087840 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e036086_P001 Zm00001e036086 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 408 452
No external refs found!