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  5. Pir_g19209

Pir_g19209 (CCR1, GR-RBP8, GRP8, ATGRP8)


Aliases : CCR1, GR-RBP8, GRP8, ATGRP8

Description : not classified & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g19209

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00198740 CCR2, ATGRP7,... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g050015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28161 ATRZ-1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06481 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01618 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10875 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11980 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27510 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01139 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009723 No alias RNA chaperone *(RZ1) & original description: CDS=187-939 0.03 OrthoFinder output from all 47 species
Azfi_s0232.g059291 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-585 0.03 OrthoFinder output from all 47 species
Azfi_s0468.g072856 GR-RBP4, GRP4 not classified & original description: CDS=1-582 0.03 OrthoFinder output from all 47 species
Cba_g04821 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g08147 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14006 ATRZ-1A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27479 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31532 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38953 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g55211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G002500.1 Ceric.09G002500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G013300.1 GR-RBP3, Ceric.35G013300 RNA editing factor *(ORRM3) & original description:... 0.03 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g03970 GR-RBP5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09095 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33870 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06304 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17136 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001672001 ATRZ-1A Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033666001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g21305 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30141 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32878 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Msp_g12890 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g29443 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23738 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26663 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33177 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26099 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g31703 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021985 GR-RBP3 not classified & original description: CDS=185-544 0.03 OrthoFinder output from all 47 species
Sam_g36205 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo81392 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc02g088790.3.1 GR-RBP3, Solyc02g088790 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Solyc10g047130.2.1 ATRZ-1A, Solyc10g047130 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Spa_g10878 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16011 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g22300 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27808 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005260_P002 Zm00001e005260 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e018490_P002 Zm00001e018490 Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 OrthoFinder output from all 47 species
Zm00001e028502_P003 Zm00001e028502 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 77 145
No external refs found!