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  5. Pir_g19503

Pir_g19503


Description : component *(ADA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0001506 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001506_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g19503

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238830 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Als_g09351 No alias component *(ADA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Als_g46884 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0108.g045237 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Cba_g17679 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Cba_g32594 No alias component *(ADA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Cba_g39163 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Dac_g03362 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
LOC_Os03g55450.1 LOC_Os03g55450 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Lfl_g02173 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Lfl_g04097 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Pir_g11294 No alias component *(ADA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Sam_g10664 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g18095 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g19955 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Smo413166 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Solyc06g068610.3.1 Solyc06g068610 component ADA1 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0070461 SAGA-type complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
InterPro domains Description Start Stop
IPR024738 Hfi1/Tada1 71 382
No external refs found!