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  5. Pir_g20473

Pir_g20473


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g20473
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00056p00185560 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.02 OrthoFinder output from all 47 species
Adi_g002762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059315 SLO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36522 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06724 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28207 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08990.t1 OTP84, Aspi01Gene08990 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14838.t1 Aspi01Gene14838 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37396.t1 Aspi01Gene37396 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031470 No alias not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.02 OrthoFinder output from all 47 species
Cba_g05295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.02 OrthoFinder output from all 47 species
Ceric.27G010800.1 Ceric.27G010800 not classified & original description: pacid=50606194... 0.03 OrthoFinder output from all 47 species
Dac_g05618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32437 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45632 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21351 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g29816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04874 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009407001 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Gb_13980 OSB1 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.02 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
Len_g47144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14103 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27636 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27823 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07605 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32272 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46631 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001030 No alias not classified & original description: CDS=1-1857 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010154 No alias not classified & original description: CDS=1-2595 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.02 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11567 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05598 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24942 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011875_P001 OTP85, Zm00001e011875 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
Zm00001e027846_P001 CRR21, Zm00001e027846 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 408
IPR002885 Pentatricopeptide_repeat 149 172
IPR002885 Pentatricopeptide_repeat 350 374
IPR002885 Pentatricopeptide_repeat 250 274
IPR002885 Pentatricopeptide_repeat 476 523
IPR002885 Pentatricopeptide_repeat 77 123
IPR002885 Pentatricopeptide_repeat 175 221
No external refs found!