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  5. Pir_g23535

Pir_g23535 (EXP15, ATEXPA15,...)


Aliases : EXP15, ATEXPA15, ATHEXP ALPHA 1.3, ATEXP15, EXPA15

Description : alpha-class expansin & original description: none


Gene families : OG0000032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23535
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.03 OrthoFinder output from all 47 species
Aop_g21880 EXP15, ATEXPA15,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g44449 ATEXPA10,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52233.t1 ATEXPA10,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G020100.1 EXPB3, ATEXPB3,... not classified & original description: pacid=50577373... 0.04 OrthoFinder output from all 47 species
Dde_g41494 ATEXPA3, EXP3,... alpha-class expansin & original description: none 0.07 OrthoFinder output from all 47 species
Gb_01504 EXPA8, ATHEXP... alpha-class expansin 0.04 OrthoFinder output from all 47 species
MA_12056g0010 ATEXPA1, EXP1,... alpha-class expansin 0.08 OrthoFinder output from all 47 species
Mp1g14140.1 EXPA8, ATHEXP... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Mp1g22700.1 EXP15, ATEXPA15,... alpha-class expansin 0.02 OrthoFinder output from all 47 species
Mp3g10120.1 EXP15, ATEXPA15,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Mp3g12300.2 EXP15, ATEXPA15,... alpha-class expansin 0.03 OrthoFinder output from all 47 species
Mp4g22180.1 EXP15, ATEXPA15,... alpha-class expansin 0.01 OrthoFinder output from all 47 species
Ore_g33754 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Smo234188 EXPB3, ATEXPB3,... Expansin-B16 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Solyc07g049540.2.1 ATHEXP BETA 1.4,... Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Spa_g30572 EXPA16, ATHEXP... alpha-class expansin & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e014247_P001 ATHEXP ALPHA... Expansin-A23 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e037885_P001 ATHEXP BETA 1.4,... Expansin-B6 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 66 148
IPR007117 Expansin_CBD 165 242
No external refs found!