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  5. Pir_g24825

Pir_g24825 (GIF1, GIF, ATGIF1, AN3)


Aliases : GIF1, GIF, ATGIF1, AN3

Description : cofactor component *(GIF) of GRF-GIF transcriptional complex & original description: none


Gene families : OG0001681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001681_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g24825

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00019250 GIF3,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
Aspi01Gene32811.t1 GIF1, GIF,... cofactor component *(GIF) of GRF-GIF transcriptional... 0.04 OrthoFinder output from all 47 species
GSVIVT01027418001 GIF3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
Ore_g02954 GIF3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.03 OrthoFinder output from all 47 species
Zm00001e005583_P001 GIF1, GIF,... cofactor component GIF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007726 SS18_N 77 132
No external refs found!