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  5. Pir_g26452

Pir_g26452 (ARF10)


Aliases : ARF10

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g26452

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00182820 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
AMTR_s00036p00215270 ARF21,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00116500 ARF1,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00211p00025860 MP, IAA24, ARF5,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT1G35240 ARF20 auxin response factor 20 0.06 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Adi_g001040 ARF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g024483 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24155 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0099.g044147 ARF16 ARF-type transcription factor & original description: CDS=1-2757 0.03 OrthoFinder output from all 47 species
Ceric.10G078200.1 ARF6, Ceric.10G078200 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.32G056500.1 ARF16, Ceric.32G056500 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g43864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003591001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
MA_5089g0010 TIR5, MSG1,... Auxin response factor 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g33451 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g42774 ARF16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08938 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Sam_g30394 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo115320 ARF6 Auxin response factor 25 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Smo424113 ARF6 Auxin response factor 6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023038_P001 ARF10, Zm00001e023038 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e030290_P005 ARF16, Zm00001e030290 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e041248_P001 ARF10, Zm00001e041248 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 278 361
IPR003340 B3_DNA-bd 109 210
No external refs found!