Pir_g29423 (ATCNGC1, CNGC1)

Aliases : ATCNGC1, CNGC1

Description : cyclic nucleotide-gated cation channel *(CNGC) & original description: none

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g29423
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00053p00015490	ATCNGC1, CNGC1,...	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
AMTR_s00210p00019190	CNGC5, ATCNGC5,...	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
AT2G24610	ATCNGC14, CNGC14	cyclic nucleotide-gated channel 14	0.03	OrthoFinder output from all 47 species
AT2G46430	ATCNGC3, CNGC3, CNGC3.C	cyclic nucleotide gated channel 3	0.02	OrthoFinder output from all 47 species
AT3G17700	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-binding transporter 1	0.02	OrthoFinder output from all 47 species
Adi_g035697	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Cba_g15401	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Cre10.g450100	No alias	Cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01027087001	ATCNGC1, CNGC1	Solute transport.channels.VIC superfamily.cyclic...	0.06	OrthoFinder output from all 47 species
GSVIVT01029407001	ATCNGC20, CNGC20, CNBT1	Solute transport.channels.VIC superfamily.cyclic...	0.02	OrthoFinder output from all 47 species
LOC_Os02g41710.1	CNGC15,...	cyclic nucleotide-gated cation channel (CNGC)	0.02	OrthoFinder output from all 47 species
LOC_Os06g08850.1	ATCNGC17,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
MA_10428782g0010	ATCNGC14, CNGC14	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Nbi_g11227	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
Pir_g25901	ATCNGC10, CNGC10, ACBK1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g32282	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Sam_g11868	No alias	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Solyc03g098210.4.1	ATCNGC20,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc05g050350.2.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc05g050360.3.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc05g050380.4.1	ATCNGC13,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Spa_g00978	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	41	329

External Links

No external refs found!

Pir_g29423 (ATCNGC1, CNGC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation