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  5. Pir_g31317

Pir_g31317 (LRL3)


Aliases : LRL3

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g31317
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 HEC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00024p00250370 RHD6,... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00079p00137860 BEE3,... External stimuli response.light.UV-A/blue... 0.04 OrthoFinder output from all 47 species
AMTR_s00106p00127480 UNE10,... RNA biosynthesis.transcriptional activation.bHLH... 0.01 OrthoFinder output from all 47 species
AT1G18400 BEE1 BR enhanced expression 1 0.03 OrthoFinder output from all 47 species
AT1G25330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G27740 RSL4 root hair defective 6-like 4 0.04 OrthoFinder output from all 47 species
AT2G42280 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G36540 BEE2 BR enhanced expression 2 0.02 OrthoFinder output from all 47 species
AT5G58010 LRL3 LJRHL1-like 3 0.03 OrthoFinder output from all 47 species
Adi_g036691 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03333 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aev_g10597 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18353 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26070 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32490 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29816 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g41589 RSL2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32833.t1 RSL2, Aspi01Gene32833 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33079.t1 UNE12, Aspi01Gene33079 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46366.t1 HEC2, Aspi01Gene46366 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54818.t2 RSL2, Aspi01Gene54818 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G025300.1 RHD6, Ceric.03G025300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G055200.1 RSL2, Ceric.14G055200 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G014000.1 RHD6, Ceric.16G014000 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.19G069900.1 LRL3, Ceric.19G069900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z051300.1 LRL3, Ceric.1Z051300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.32G068300.1 Ceric.32G068300 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.34G030200.1 BPEp, ZCW32,... regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dac_g07111 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g09242 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Dac_g30817 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24939 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05791 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ehy_g31834 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028238001 PIF3, POC1, PAP3 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_30839 RHD6 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Gb_36369 BPEp, ZCW32, BPE, BPEub transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g51140.1 LOC_Os01g51140 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os02g47660.1 CIB1, LOC_Os02g47660 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g10770.1 RSL2, LOC_Os03g10770 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os03g42100.1 RSL2, LOC_Os03g42100 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os05g46370.1 LOC_Os05g46370 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08500.1 LRL3, LOC_Os06g08500 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os08g01700.1 HEC3, LOC_Os08g01700 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
LOC_Os11g25560.1 LOC_Os11g25560 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os12g39850.1 RSL4, LOC_Os12g39850 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os12g40590.1 SPT, LOC_Os12g40590 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g37679 RHD6 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_100071g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_42080g0010 CIB1 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Mp5g18910.1 HEC1 transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Mp6g21470.1 RSL2 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Nbi_g16867 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11151 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19546 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34452 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44492 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Pnu_g33726 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_8460V3.1 RSL2, Pp3c3_8460 ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 OrthoFinder output from all 47 species
Ppi_g05246 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g28847 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Smo402301 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo405220 HEC1 RNA biosynthesis.transcriptional activation.bHLH... 0.01 OrthoFinder output from all 47 species
Smo425336 LRL1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo444782 LRL2 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Solyc01g107140.3.1 Solyc01g107140 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc02g091440.2.1 RHD6, Solyc02g091440 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc06g083170.3.1 Solyc06g083170 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Spa_g33531 RHD6 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08390 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38256 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g39775 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006917_P001 PIL5, PIF1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e011084_P002 Zm00001e011084 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e025656_P001 RHD6, Zm00001e025656 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e034146_P001 LRL1, Zm00001e034146 transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Zm00001e035422_P001 RSL4, Zm00001e035422 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 207 252
No external refs found!