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  5. Pir_g31936

Pir_g31936


Description : arabinogalactan protein *(Xylogen) & original description: none


Gene families : OG0000195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g31936
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00120480 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 OrthoFinder output from all 47 species
AT3G22580 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 OrthoFinder output from all 47 species
Gb_06123 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g57980.1 LOC_Os03g57980 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g47200.1 LOC_Os06g47200 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g07790.1 LOC_Os07g07790 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
LOC_Os10g11370.1 LOC_Os10g11370 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_26320g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_72349g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g06115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g23314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59467 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19919 No alias arabinogalactan protein *(Xylogen) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c14_3790V3.1 Pp3c14_3790 Bifunctional inhibitor/lipid-transfer protein/seed... 0.01 OrthoFinder output from all 47 species
Solyc03g005200.3.1 Solyc03g005200 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Solyc08g007460.3.1 Solyc08g007460 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e005336_P001 Zm00001e005336 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species
Zm00001e038813_P001 Zm00001e038813 xylogen-type arabinogalactan protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 10 89
No external refs found!