1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g33451

Pir_g33451 (ARF10)


Aliases : ARF10

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g33451
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00215270 ARF21,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24127.t1 ARF6, Aspi01Gene24127 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001367 ARF10 ARF-type transcription factor & original description: CDS=1-2124 0.04 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g08691 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025198001 ARF10 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_31132 ARF4 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39685 ARF6 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Pir_g26452 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27620 ARF4 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.04 OrthoFinder output from all 47 species
Sam_g40110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49898 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g037530.3.1 ARF8, ATARF8,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc11g069500.2.1 ARF10, Solyc11g069500 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc12g006350.3.1 ARF6, Solyc12g006350 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g26009 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004554_P002 ARF16, Zm00001e004554 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e023038_P001 ARF10, Zm00001e023038 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e041248_P001 ARF10, Zm00001e041248 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004594 pantothenate kinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0015937 coenzyme A biosynthetic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 279 362
IPR003340 B3_DNA-bd 113 214
No external refs found!