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  5. Pir_g35318

Pir_g35318 (ARF3, ETT)


Aliases : ARF3, ETT

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g35318
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.03 OrthoFinder output from all 47 species
Als_g41559 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G060100.1 ARF1, Ceric.18G060100 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.28G004000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016266001 ARF16 Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
GSVIVT01020805001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48870.1 ARF3, ETT, LOC_Os05g48870 transcription factor (ARF) 0.07 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Pnu_g06724 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e013639_P001 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e025163_P001 ARF6, Zm00001e025163 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 285 364
IPR003340 B3_DNA-bd 157 258
No external refs found!