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  5. Pir_g37022

Pir_g37022


Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g37022

Target Alias Description ECC score Gene Family Method Actions
AT5G60670 No alias Ribosomal protein L11 family protein 0.01 OrthoFinder output from all 47 species
Aop_g70967 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.15G067600.1 Ceric.15G067600 component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01025189001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01025683001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os02g47140.1 LOC_Os02g47140 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os04g50990.1 LOC_Os04g50990 component RPL12 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Lfl_g16793 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Lfl_g22014 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Nbi_g12624 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019962 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Solyc11g069440.1.1 Solyc11g069440 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g04459 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g22192 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Zm00001e007067_P001 Zm00001e007067 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e008316_P001 Zm00001e008316 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e023297_P001 Zm00001e023297 component RPL12 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 41 110
IPR020784 Ribosomal_L11_N 1 35
No external refs found!