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  5. Pir_g52106

Pir_g52106 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g52106
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
AMTR_s00122p00115170 CRR21 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G14470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G03380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005790 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g026204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21000 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32785 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13481 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20750 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26414 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g15305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15602 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0485.g073410 No alias not classified & original description: CDS=1-1641 0.03 OrthoFinder output from all 47 species
Cba_g05522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G062800.1 Ceric.06G062800 not classified & original description: pacid=50620833... 0.03 OrthoFinder output from all 47 species
Ceric.17G049800.1 Ceric.17G049800 not classified & original description: pacid=50617439... 0.04 OrthoFinder output from all 47 species
Dac_g36384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07645 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05762 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g05964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21750 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Gb_03545 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
LOC_Os01g42280.1 CRR21, LOC_Os01g42280 RNA editing factor (CRR21) 0.03 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os03g62400.1 LOC_Os03g62400 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.04 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g26572 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36740 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436932g0010 No alias ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
MA_106123g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
MA_59599g0010 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_86894g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Msp_g09691 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06848 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010124 No alias ssDNA-binding protein *(OSB) & original description: CDS=208-2547 0.02 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.02 OrthoFinder output from all 47 species
Zm00001e040920_P001 Zm00001e040920 Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004560 alpha-L-fucosidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015928 fucosidase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0017003 protein-heme linkage IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0140673 transcription elongation-coupled chromatin remodeling IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 523 585
IPR032867 DYW_dom 621 713
IPR002885 Pentatricopeptide_repeat 205 235
IPR002885 Pentatricopeptide_repeat 481 506
IPR002885 Pentatricopeptide_repeat 178 202
IPR002885 Pentatricopeptide_repeat 379 399
IPR002885 Pentatricopeptide_repeat 278 303
IPR002885 Pentatricopeptide_repeat 99 146
IPR002885 Pentatricopeptide_repeat 407 454
IPR002885 Pentatricopeptide_repeat 304 349
No external refs found!