Description : histone demethylase *(KDM5) & original description: none
Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G20400 | PKDM7B, JMJ14 | JUMONJI 14 | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g06155 | PKDM7D | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G058700.1 | PKDM7D, Ceric.28G058700 | histone demethylase *(PKDM7) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g10770.1 | PKDM7D, LOC_Os05g10770 | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g10351 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0035.g011322 | PKDM7D | not classified & original description: CDS=1-2538 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g18668 | No alias | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g17545 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023636_P012 | PKDM7D, Zm00001e023636 | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0006979 | response to oxidative stress | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | HCCA |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030120 | vesicle coat | IEP | HCCA |
| CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| MF | GO:0051213 | dioxygenase activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003347 | JmjC_dom | 424 | 540 |
| IPR004198 | Znf_C5HC2 | 633 | 685 |
| IPR013637 | Lys_sp_deMease-like_dom | 1046 | 1198 |
| IPR013637 | Lys_sp_deMease-like_dom | 752 | 1036 |
| IPR013637 | Lys_sp_deMease-like_dom | 1226 | 1411 |
| IPR003349 | JmjN | 38 | 71 |
| IPR001606 | ARID_dom | 113 | 194 |
| IPR019787 | Znf_PHD-finger | 253 | 300 |
| No external refs found! |
