Pir_g53062 (UBQ6)

Aliases : UBQ6

Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g53062
Cluster	HCCA: Cluster_200

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
AMTR_s00040p00104050	evm_27.TU.AmTr_v1...	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris	0.01	OrthoFinder output from all 47 species
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.01	OrthoFinder output from all 47 species
AT2G47110	UBQ6	ubiquitin 6	0.02	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.01	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.01	OrthoFinder output from all 47 species
Adi_g023730	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Aev_g42134	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g10801	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g48963	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g37486	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.09G077700.1	Ceric.09G077700	not classified & original description: pacid=50586978...	0.07	OrthoFinder output from all 47 species
Ceric.21G057000.1	UBQ6, Ceric.21G057000	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre06.g273600	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Dde_g29687	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ehy_g25908	UBQ5	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
MA_10431748g0010	No alias	Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp7g12760.1	UBQ6	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Msp_g38968	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Pir_g02936	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c12_5640V3.1	UBQ6, Pp3c12_5640	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Pp3c4_19000V3.1	UBQ6, Pp3c4_19000	ubiquitin 6	0.01	OrthoFinder output from all 47 species
Ppi_g07872	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g07360	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Sam_g20114	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo111605	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Solyc03g082570.4.1	Solyc03g082570	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Solyc08g083120.3.1	Solyc08g083120	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Spa_g43571	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Tin_g28021	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e026237_P001	UBQ6, Zm00001e026237	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	1	72
IPR002906	Ribosomal_S27a	100	125

External Links

No external refs found!

Pir_g53062 (UBQ6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation