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  5. Pir_g56258

Pir_g56258


Description : component *(eS25) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g56258

Target Alias Description ECC score Gene Family Method Actions
Adi_g007622 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g042161 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g09917 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ala_g20286 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g56654 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g37907 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001572 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Ceric.10G003600.1 Ceric.10G003600 component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.5 No alias 40S ribosomal protein S25-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre08.g382500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Dac_g25480 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dac_g33046 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g23757 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g35742 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g12181 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01000974001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01010721001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_01693 No alias component RPS25 of SSU proteome 0.01 OrthoFinder output from all 47 species
LOC_Os08g44480.1 LOC_Os08g44480 component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os09g39540.1 LOC_Os09g39540 component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
Len_g06753 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Mp4g06120.1 No alias component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
Pir_g08680 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Pp3c14_13580V3.1 Pp3c14_13580 Ribosomal protein S25 family protein 0.01 OrthoFinder output from all 47 species
Pp3c17_4670V3.1 Pp3c17_4670 Ribosomal protein S25 family protein 0.01 OrthoFinder output from all 47 species
Sam_g20177 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g28227 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Smo172404 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Solyc02g069850.3.1 Solyc02g069850 component RPS25 of SSU proteome 0.04 OrthoFinder output from all 47 species
Tin_g42471 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g43310 No alias component *(eS25) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e003921_P001 Zm00001e003921 component RPS25 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e019589_P001 Zm00001e019589 component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e022058_P001 Zm00001e022058 component RPS25 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e028930_P001 Zm00001e028930 component RPS25 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 13 112
No external refs found!