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  5. Pir_g56915

Pir_g56915


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g56915

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 OTP86,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
Adi_g003839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10633 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23881 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42177 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g24235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g31186 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55180 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g57876 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71957.t1 EMB2261, Aspi01Gene71957 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.01 OrthoFinder output from all 47 species
Cba_g04081 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g07724 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.01 OrthoFinder output from all 47 species
Ceric.04G079600.1 OTP84, Ceric.04G079600 not classified & original description: pacid=50631214... 0.03 OrthoFinder output from all 47 species
Dac_g04642 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g03929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06075 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07052 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g74600.1 CRR22, LOC_Os01g74600 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
Len_g03808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05426 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33522 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432704g0020 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.01 OrthoFinder output from all 47 species
Msp_g04385 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03133 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04226 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15317 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32536 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33734 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000158 No alias not classified & original description: CDS=1-2931 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.03 OrthoFinder output from all 47 species
Sam_g01624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g081290.4.1 Solyc01g081290 protein kinase (PEPRK) 0.02 OrthoFinder output from all 47 species
Solyc02g079380.2.1 CRR22, Solyc02g079380 RNA editing factor (CRR22) 0.02 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g14323 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19996 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45519 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 337 385
IPR002885 Pentatricopeptide_repeat 977 1024
IPR002885 Pentatricopeptide_repeat 437 485
IPR002885 Pentatricopeptide_repeat 1080 1124
IPR002885 Pentatricopeptide_repeat 842 888
IPR002885 Pentatricopeptide_repeat 740 787
IPR002885 Pentatricopeptide_repeat 1157 1179
IPR002885 Pentatricopeptide_repeat 542 571
IPR002885 Pentatricopeptide_repeat 238 268
IPR002885 Pentatricopeptide_repeat 614 638
IPR002885 Pentatricopeptide_repeat 138 165
IPR002885 Pentatricopeptide_repeat 945 975
IPR002885 Pentatricopeptide_repeat 814 841
No external refs found!