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  5. Pir_g57081

Pir_g57081 (PGP13)


Aliases : PGP13

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g57081
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00108620 PGP11,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00109790 PGP11,... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AMTR_s00049p00128460 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g029160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058585 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19611 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20043 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20821 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33590 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16050 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37349 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11005 PGP11 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18063 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05873.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12320.t1 PGP2, Aspi01Gene12320 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62053.t1 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.7 PGP2 ABC transporter B family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Len_g23455 PGP11 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03498 PGP2 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432922g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_178534g0010 PGP2 ABC transporter B family member 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_636449g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_82945g0030 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9253g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp2g21430.1 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Nbi_g02507 PGP6 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19207 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13619 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo230688 ABCB19,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Tin_g12815 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 435 584
IPR003439 ABC_transporter-like_ATP-bd 1082 1230
IPR011527 ABC1_TM_dom 741 1013
IPR011527 ABC1_TM_dom 94 365
No external refs found!