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  5. Pir_g57728

Pir_g57728


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g57728

Target Alias Description ECC score Gene Family Method Actions
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g005327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036821 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g053631 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g073485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26256 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g35531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46291 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54955 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56368 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08806 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09077 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11093 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28594 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36885 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010932 REME1 not classified & original description: CDS=1-1479 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024865 No alias not classified & original description: CDS=234-3254 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031470 No alias not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063362 No alias not classified & original description: CDS=1-2379 0.04 OrthoFinder output from all 47 species
Cba_g06563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06933 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19771 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Ceric.33G052800.1 Ceric.33G052800 not classified & original description: pacid=50607149... 0.03 OrthoFinder output from all 47 species
Dac_g22525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43254 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08260 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38672 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47921 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22354 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03866 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04722 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18845 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07787 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07817 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g25560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12401 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03900 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04603 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18869 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g002023 No alias not classified & original description: CDS=1-2592 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010179 No alias not classified & original description: CDS=88-2685 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0172.g024419 No alias not classified & original description: CDS=1-2448 0.03 OrthoFinder output from all 47 species
Sam_g03383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g14510 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17180 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51828 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26770 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1146 1202
IPR002885 Pentatricopeptide_repeat 352 374
IPR002885 Pentatricopeptide_repeat 655 677
IPR002885 Pentatricopeptide_repeat 582 612
IPR002885 Pentatricopeptide_repeat 150 171
IPR002885 Pentatricopeptide_repeat 251 274
IPR002885 Pentatricopeptide_repeat 49 74
IPR002885 Pentatricopeptide_repeat 882 912
IPR002885 Pentatricopeptide_repeat 1093 1112
IPR002885 Pentatricopeptide_repeat 983 1013
IPR002885 Pentatricopeptide_repeat 554 579
IPR002885 Pentatricopeptide_repeat 683 709
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 176 220
IPR002885 Pentatricopeptide_repeat 1015 1062
IPR002885 Pentatricopeptide_repeat 778 825
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 277 325
No external refs found!