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  5. Pir_g61118

Pir_g61118


Description : not classified & original description: none


Gene families : OG0006520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006520_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g61118

Target Alias Description ECC score Gene Family Method Actions
AT2G47680 No alias zinc finger (CCCH type) helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g007979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo423539 No alias DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e025569_P001 Zm00001e025569 Zinc finger CCCH domain-containing protein 4 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004730 pseudouridylate synthase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 748 769
IPR001650 Helicase_C 277 400
IPR019446 BMT5-like 835 993
IPR041367 Znf-CCCH_4 776 796
IPR011545 DEAD/DEAH_box_helicase_dom 51 194
No external refs found!