1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g63644

Pir_g63644


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g63644

Target Alias Description ECC score Gene Family Method Actions
AT4G19191 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01906.t1 Aspi01Gene01906 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21963.t1 Aspi01Gene21963 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68744.t1 Aspi01Gene68744 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0197.g057356 No alias not classified & original description: CDS=1-2922 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066523 EMB2758 not classified & original description: CDS=141-2294 0.03 OrthoFinder output from all 47 species
Cba_g04726 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29529 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G007900.1 Ceric.20G007900 not classified & original description: pacid=50566810... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dac_g03373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03759 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10759 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15564 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16405 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21844 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28875 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47657 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g66160.1 REME1, LOC_Os01g66160 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Len_g03909 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18597 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18961 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25856 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44791 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g04754 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07802 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03803 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g30346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43650 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01285 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53552 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo107825 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Spa_g04429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13913 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13206 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21286 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23264 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31074 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 200 223
IPR002885 Pentatricopeptide_repeat 98 120
IPR002885 Pentatricopeptide_repeat 612 631
IPR002885 Pentatricopeptide_repeat 709 732
IPR002885 Pentatricopeptide_repeat 302 324
IPR002885 Pentatricopeptide_repeat 226 272
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 430 476
IPR002885 Pentatricopeptide_repeat 633 681
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 531 578
IPR002885 Pentatricopeptide_repeat 328 374
IPR046848 E_motif 753 796
No external refs found!