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  5. Tin_g01104

Tin_g01104


Description : E3 ubiquiTin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g01104
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267930 evm_27.TU.AmTr_v1... U-box domain-containing protein 19 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00153p00035720 ATPUB17, PUB17,... U-box domain-containing protein 1 OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.03 OrthoFinder output from all 47 species
AT4G21350 PUB8, B80 plant U-box 8 0.02 OrthoFinder output from all 47 species
Adi_g009234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g017517 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05257 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07408 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g08869 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16049 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17483 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19238 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00484 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene01377.t1 PUB14, ATPUB14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36187.t1 ATPUB17, PUB17,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44181.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene72934.t1 PUB13, ATPUB13,... E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04504 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.04 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G012900.1 Ceric.26G012900 not classified & original description: pacid=50598948... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.20 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g02154 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08480 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44834 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01430 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02331 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02285 ATPUB17, PUB17 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02800 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04978 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007275001 PUB9, ATPUB9 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020229001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_29129 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g72600.1 LOC_Os01g72600 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g28720.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g32100.1 LOC_Os03g32100 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Len_g08985 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g16436 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g01206 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g03120 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07686 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39748 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12553 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01237 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17363 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=347-2224 0.03 OrthoFinder output from all 47 species
Sam_g11228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo61948 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc06g076040.3.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g08558 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18762 ATPUB17, PUB17 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g02458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014377_P001 ATPUB17, PUB17,... U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e035415_P001 Zm00001e035415 U-box domain-containing protein 4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 424 462
IPR003613 Ubox_domain 291 362
No external refs found!