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  5. Tin_g03535

Tin_g03535


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g03535

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
Adi_g018868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g42174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07148 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17277 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31198 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07079 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g19311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07081 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g07588 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16794 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g24180 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08990.t1 OTP84, Aspi01Gene08990 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011983 No alias not classified & original description: CDS=1-2745 0.04 OrthoFinder output from all 47 species
Azfi_s0012.g012931 No alias not classified & original description: CDS=1-3024 0.08 OrthoFinder output from all 47 species
Azfi_s0035.g025537 No alias ssDNA-binding protein *(OSB) & original description: CDS=167-2242 0.03 OrthoFinder output from all 47 species
Azfi_s0039.g026394 OTP86 not classified & original description: CDS=1-2238 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044009 No alias not classified & original description: CDS=1-2178 0.04 OrthoFinder output from all 47 species
Azfi_s0119.g046677 CRR2 not classified & original description: CDS=1-1557 0.05 OrthoFinder output from all 47 species
Azfi_s0128.g048815 No alias not classified & original description: CDS=1-1722 0.05 OrthoFinder output from all 47 species
Azfi_s0151.g053374 No alias ssDNA-binding protein *(OSB) & original description: CDS=217-2670 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059832 No alias not classified & original description: CDS=1-2646 0.05 OrthoFinder output from all 47 species
Azfi_s0257.g060586 No alias not classified & original description: CDS=1-3168 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.06 OrthoFinder output from all 47 species
Azfi_s0425.g069243 No alias not classified & original description: CDS=144-3230 0.03 OrthoFinder output from all 47 species
Cba_g06861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29702 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g76621 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G028200.1 OTP84, Ceric.02G028200 not classified & original description: pacid=50583866... 0.05 OrthoFinder output from all 47 species
Ceric.12G090300.1 Ceric.12G090300 not classified & original description: pacid=50600499... 0.05 OrthoFinder output from all 47 species
Ceric.13G011700.1 Ceric.13G011700 not classified & original description: pacid=50636754... 0.05 OrthoFinder output from all 47 species
Ceric.17G033700.1 VAC1, ECB2,... not classified & original description: pacid=50617387... 0.05 OrthoFinder output from all 47 species
Ceric.31G069700.1 CRR21, Ceric.31G069700 not classified & original description: pacid=50574812... 0.05 OrthoFinder output from all 47 species
Dac_g02910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21425 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g21990 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28526 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46559 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g50256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50444 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Lfl_g07422 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07753 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g25560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41204 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g38771 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g15155 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09778 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo107825 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Smo126075 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
Smo84746 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17746 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e032679_P001 Zm00001e032679 RNA editing factor (OTP80) 0.02 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016887 ATP hydrolysis activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1100 1123
IPR002885 Pentatricopeptide_repeat 969 992
IPR002885 Pentatricopeptide_repeat 593 623
IPR002885 Pentatricopeptide_repeat 1070 1091
IPR002885 Pentatricopeptide_repeat 190 219
IPR002885 Pentatricopeptide_repeat 796 825
IPR002885 Pentatricopeptide_repeat 363 385
IPR002885 Pentatricopeptide_repeat 391 419
IPR002885 Pentatricopeptide_repeat 868 889
IPR002885 Pentatricopeptide_repeat 565 589
IPR002885 Pentatricopeptide_repeat 290 320
IPR002885 Pentatricopeptide_repeat 262 286
IPR002885 Pentatricopeptide_repeat 464 487
IPR002885 Pentatricopeptide_repeat 768 789
IPR002885 Pentatricopeptide_repeat 490 537
IPR002885 Pentatricopeptide_repeat 894 941
IPR002885 Pentatricopeptide_repeat 691 738
IPR002885 Pentatricopeptide_repeat 85 132
IPR002885 Pentatricopeptide_repeat 995 1042
No external refs found!