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  5. Tin_g05225

Tin_g05225


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05225

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00063190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
Aev_g07157 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29330 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16783 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17640 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30691 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36433 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g38080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0016.g014262 No alias not classified & original description: CDS=1-4500 0.05 OrthoFinder output from all 47 species
Cba_g15165 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.03G008600.1 Ceric.03G008600 not classified & original description: pacid=50571724... 0.05 OrthoFinder output from all 47 species
Ceric.09G059800.1 Ceric.09G059800 not classified & original description: pacid=50588067... 0.03 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.06 OrthoFinder output from all 47 species
Ceric.25G017200.1 VAC1, ECB2,... not classified & original description: pacid=50594284... 0.04 OrthoFinder output from all 47 species
Ceric.39G023200.1 CRR2, Ceric.39G023200 not classified & original description: pacid=50582462... 0.05 OrthoFinder output from all 47 species
Dac_g05532 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g35258 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g24299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Len_g25825 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g56529 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g17636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28018 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g41118 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g43763 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05484 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05901 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07600 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g12745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13680 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g15564 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20506 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g23771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24704 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g25278 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g28128 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g41649 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12166 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43237 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020215 No alias not classified & original description: CDS=1-5316 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0170.g024361 OTP84 cyclin-dependent kinase inhibitor *(KRP/ICK) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g46633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 50 75
IPR002885 Pentatricopeptide_repeat 453 475
IPR002885 Pentatricopeptide_repeat 655 679
IPR002885 Pentatricopeptide_repeat 754 776
IPR002885 Pentatricopeptide_repeat 352 373
IPR002885 Pentatricopeptide_repeat 280 308
IPR046848 E_motif 796 858
IPR002885 Pentatricopeptide_repeat 77 121
IPR002885 Pentatricopeptide_repeat 378 424
IPR002885 Pentatricopeptide_repeat 680 727
IPR002885 Pentatricopeptide_repeat 583 627
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 479 525
IPR032867 DYW_dom 891 982
No external refs found!