Tin_g06101


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.02 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g013826 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082266 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102707 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26256 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11484 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25080 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g34624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35628 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36221 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27898 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g41640 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28684 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63826 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67876 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02996.t1 CRR2, Aspi01Gene02996 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33738.t1 Aspi01Gene33738 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35047.t1 Aspi01Gene35047 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69669.t1 CRR22, Aspi01Gene69669 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0232.g059304 No alias not classified & original description: CDS=1-2862 0.04 OrthoFinder output from all 47 species
Cba_g15366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20773 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67421 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67900 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G020200.1 Ceric.22G020200 not classified & original description: pacid=50615278... 0.03 OrthoFinder output from all 47 species
Ceric.22G077500.1 Ceric.22G077500 not classified & original description: pacid=50615168... 0.03 OrthoFinder output from all 47 species
Ceric.29G083600.1 Ceric.29G083600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G017600.1 Ceric.30G017600 not classified & original description: pacid=50608172... 0.02 OrthoFinder output from all 47 species
Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.03 OrthoFinder output from all 47 species
Ceric.35G064900.1 Ceric.35G064900 not classified & original description: pacid=50581299... 0.03 OrthoFinder output from all 47 species
Ceric.39G046500.1 Ceric.39G046500 not classified & original description: pacid=50582543... 0.02 OrthoFinder output from all 47 species
Dac_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g18832 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31026 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42988 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07737 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22351 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25739 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49997 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015461001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
LOC_Os01g19380.1 LOC_Os01g19380 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os07g07620.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
LOC_Os12g36620.1 LOC_Os12g36620 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07422 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08720 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35084 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g14419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07674 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08417 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11803 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19585 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g23882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27821 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27843 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38771 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g32476 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63872 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18893 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018323 No alias not classified & original description: CDS=1-1728 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023175 No alias not classified & original description: CDS=1-2640 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026911 REME1 not classified & original description: CDS=1-1512 0.03 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc03g119950.1.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Solyc08g013850.1.1 CRR21, Solyc08g013850 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
Spa_g09809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14318 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07829 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28890 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 203 249
IPR002885 Pentatricopeptide_repeat 508 555
IPR002885 Pentatricopeptide_repeat 408 454
IPR002885 Pentatricopeptide_repeat 713 760
IPR002885 Pentatricopeptide_repeat 304 351
IPR002885 Pentatricopeptide_repeat 611 657
IPR002885 Pentatricopeptide_repeat 277 301
IPR002885 Pentatricopeptide_repeat 688 710
IPR002885 Pentatricopeptide_repeat 175 202
IPR002885 Pentatricopeptide_repeat 381 403
IPR002885 Pentatricopeptide_repeat 483 506
No external refs found!