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  5. Tin_g06551

Tin_g06551 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g06551
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00230160 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07982 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33170 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g57869 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62348 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36302.t1 Aspi01Gene36302 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.04 OrthoFinder output from all 47 species
Azfi_s0245.g060017 No alias not classified & original description: CDS=1-2076 0.04 OrthoFinder output from all 47 species
Cba_g04052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04659 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11192 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34742 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g28151 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g68490.1 MEF21, LOC_Os01g68490 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Len_g04746 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18873 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18987 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g31355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26428 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23766 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24038 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g096510.3.1 Solyc12g096510 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Zm00001e008203_P002 Zm00001e008203 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 411 433
IPR002885 Pentatricopeptide_repeat 207 232
IPR002885 Pentatricopeptide_repeat 105 125
IPR002885 Pentatricopeptide_repeat 233 279
IPR002885 Pentatricopeptide_repeat 334 381
IPR002885 Pentatricopeptide_repeat 130 177
IPR002885 Pentatricopeptide_repeat 436 483
No external refs found!