Tin_g07965

Description : component *(bS21c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004103_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g07965
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AT3G27160	GHS1	Ribosomal protein S21 family protein	0.03	OrthoFinder output from all 47 species
Ala_g00986	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Als_g01448	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aop_g18482	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0003.g007465	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g02864	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g08732	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre01.g017300	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g01906	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g41032	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g00353	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os02g09590.1	GHS1, LOC_Os02g09590	component mtRPS21\|psRPS21 of mitochondrial ribosome...	0.02	OrthoFinder output from all 47 species
Len_g15740	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Mp4g21580.1	No alias	component mtRPS21\|psRPS21 of mitochondrial ribosome...	0.05	OrthoFinder output from all 47 species
Nbi_g05106	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g01870	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c10_22890V3.1	GHS1, Pp3c10_22890	Ribosomal protein S21 family protein	0.01	OrthoFinder output from all 47 species
Pp3c23_14280V3.1	Pp3c23_14280	Ribosomal protein S21 family protein	0.01	OrthoFinder output from all 47 species
Ppi_g01614	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007775	No alias	component *(bS21c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo444102	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Zm00001e013920_P001	GHS1, Zm00001e013920	component mtRPS21\|psRPS21 of mitochondrial ribosome...	0.02	OrthoFinder output from all 47 species
Zm00001e025066_P001	GHS1, Zm00001e025066	component mtRPS21\|psRPS21 of mitochondrial ribosome...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0017006	protein-tetrapyrrole linkage	IEP	HCCA
BP	GO:0017007	protein-bilin linkage	IEP	HCCA
BP	GO:0017009	protein-phycocyanobilin linkage	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001911	Ribosomal_S21	75	128

External Links

No external refs found!

Tin_g07965

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation