Tin_g08092 (PUB25)

Aliases : PUB25

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g08092

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G52450	PUB22	plant U-box 22	0.02	OrthoFinder output from all 47 species
Aev_g38062	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10929	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g57047	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08904	PUB26	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene19342.t1	PUB26, Aspi01Gene19342	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene19374.t1	Aspi01Gene19374	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g46168	PUB23	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01026542001	CMPG2, ATCMPG2	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os02g33680.1	CMPG2, ATCMPG2,...	U-box domain-containing protein 29 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os02g34410.1	PUB25, LOC_Os02g34410	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os04g49970.1	PUB23, LOC_Os04g49970	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10433846g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_126399g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_200041g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_415393g0010	PUB25	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp3g22750.1	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Ore_g33879	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g27483	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g007030.3.1	PUB22, Solyc01g007030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc01g007050.3.1	PUB24, Solyc01g007050	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc06g074140.1.1	PUB24, Solyc06g074140	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc11g068920.1.1	PUB23, Solyc11g068920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e014752_P001	PUB23, Zm00001e014752	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e038657_P001	Zm00001e038657	U-box domain-containing protein 75 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	21	89

External Links

No external refs found!

Tin_g08092 (PUB25)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation