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  5. Tin_g08260

Tin_g08260


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08260

Target Alias Description ECC score Gene Family Method Actions
AT1G31430 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G31070 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g053729 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17868 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43139 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g07498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g24239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g30691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17754 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0094.g043402 No alias not classified & original description: CDS=1-2055 0.03 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.01 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17225 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G063100.1 Ceric.14G063100 not classified & original description: pacid=50634149... 0.03 OrthoFinder output from all 47 species
Dac_g07318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36050 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43531 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08185 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24377 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41493 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g22835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
GSVIVT01015461001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_32185 OSB3 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Len_g04822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06198 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07019 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g28793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g30310 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g44897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20201 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g03894 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06477 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18893 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004758 No alias not classified & original description: CDS=1-2223 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015175 No alias not classified & original description: CDS=1-2994 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020573 No alias not classified & original description: CDS=184-1233 0.02 OrthoFinder output from all 47 species
Sam_g13514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Smo99677 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Solyc10g005090.3.1 Solyc10g005090 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g07598 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 698 746
IPR002885 Pentatricopeptide_repeat 396 442
IPR002885 Pentatricopeptide_repeat 294 342
IPR002885 Pentatricopeptide_repeat 598 645
IPR002885 Pentatricopeptide_repeat 196 225
IPR002885 Pentatricopeptide_repeat 499 529
IPR002885 Pentatricopeptide_repeat 269 293
IPR002885 Pentatricopeptide_repeat 97 122
IPR002885 Pentatricopeptide_repeat 773 795
IPR002885 Pentatricopeptide_repeat 471 492
IPR002885 Pentatricopeptide_repeat 169 189
IPR002885 Pentatricopeptide_repeat 572 595
No external refs found!