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  5. Tin_g08969

Tin_g08969


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g08969

Target Alias Description ECC score Gene Family Method Actions
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g066234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46210 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58136.t1 Aspi01Gene58136 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58651.t1 Aspi01Gene58651 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g37733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G083100.1 Ceric.14G083100 not classified & original description: pacid=50633279... 0.05 OrthoFinder output from all 47 species
Dac_g04251 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dcu_g32754 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02398 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g27311 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_30381 RHC1A Probable E3 ubiquitin-protein ligase RHC2A... 0.04 OrthoFinder output from all 47 species
LOC_Os09g06770.1 LOC_Os09g06770 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g22017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28304 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_413614g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g14693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15069 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g12845 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g29204 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ppi_g12414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30226 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g56162 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.03 OrthoFinder output from all 47 species
Sam_g05103 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016135_P001 Zm00001e016135 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e017377_P001 Zm00001e017377 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 209 251
IPR039525 RNF126-like_zinc-ribbon 6 36
No external refs found!