Tin_g09854 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09854

Target Alias Description ECC score Gene Family Method Actions
Ala_g16398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24418 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35869 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g11263 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g59941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34786.t1 Aspi01Gene34786 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000396 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007907 No alias not classified & original description: CDS=160-2841 0.03 OrthoFinder output from all 47 species
Azfi_s0017.g014562 No alias not classified & original description: CDS=131-1849 0.05 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.05 OrthoFinder output from all 47 species
Cba_g19882 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G124700.1 Ceric.01G124700 not classified & original description: pacid=50591887... 0.04 OrthoFinder output from all 47 species
Ceric.02G019000.1 Ceric.02G019000 not classified & original description: pacid=50585115... 0.05 OrthoFinder output from all 47 species
Ceric.02G043000.1 Ceric.02G043000 not classified & original description: pacid=50585529... 0.04 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.04 OrthoFinder output from all 47 species
Dcu_g06096 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08759 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47943 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g31029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09274 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18987 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24813 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10721g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Msp_g15459 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41131 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13583 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31296 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g35733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53029 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20286 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 386 416
IPR002885 Pentatricopeptide_repeat 657 681
IPR002885 Pentatricopeptide_repeat 358 379
IPR002885 Pentatricopeptide_repeat 184 212
IPR002885 Pentatricopeptide_repeat 456 475
IPR002885 Pentatricopeptide_repeat 485 511
IPR002885 Pentatricopeptide_repeat 282 330
IPR002885 Pentatricopeptide_repeat 585 631
No external refs found!