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  5. Tin_g09876

Tin_g09876 (emb1473)


Aliases : emb1473

Description : component *(uL13c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g09876

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00228230 emb1473,... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
AT1G78630 emb1473 Ribosomal protein L13 family protein 0.09 OrthoFinder output from all 47 species
Ala_g09807 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Als_g17613 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g00301 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Azfi_s0224.g058887 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g03008 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.14G072800.1 emb1473, Ceric.14G072800 component *(uL13c) of large plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.24 emb1473 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g264350 emb1473 Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Dac_g17592 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g00726 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g01255 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01014101001 emb1473 Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_28095 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
LOC_Os01g54540.1 emb1473, LOC_Os01g54540 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Len_g01005 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g03832 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
MA_10433400g0010 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
MA_27171g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp3g07030.1 emb1473 component psRPL13 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Msp_g09623 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g04003 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g11308 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pp3c24_18330V3.1 emb1473, Pp3c24_18330 Ribosomal protein L13 family protein 0.02 OrthoFinder output from all 47 species
Ppi_g11794 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g16893 No alias component *(uL13c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Smo7665 emb1473 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Solyc07g062190.4.1 emb1473, Solyc07g062190 component psRPL13 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Solyc12g014390.3.1 emb1473, Solyc12g014390 component psRPL13 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Spa_g21366 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 100 218
No external refs found!