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  5. Tin_g10912

Tin_g10912


Description : component *(bS20c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006775 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006775_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g10912
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00188920 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Aev_g22835 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g08893 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g06235 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g03027 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0228.g059056 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g11240 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.11G009600.1 Ceric.11G009600 component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g494750 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g10899 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g37258 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g11872 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01014290001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_27504 No alias component psRPS20 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os01g48690.1 LOC_Os01g48690 component psRPS20 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g00203 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g00868 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp7g14740.1 No alias component psRPS20 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Ore_g04849 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pir_g10569 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ppi_g26924 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009139 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc07g062870.3.1 Solyc07g062870 component psRPS20 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g08226 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Spa_g08227 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Spa_g50703 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e028066_P001 Zm00001e028066 component psRPS20 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 67 153
No external refs found!