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  5. Tin_g11014

Tin_g11014 (CHR01, CHR1, CHA1,...)


Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : chromaTin remodeling factor *(DDM1) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g11014

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
AT5G18620 CHR17 chromatin remodeling factor17 0.03 OrthoFinder output from all 47 species
Ala_g28495 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g09627 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14150.t1 CHR11, Aspi01Gene14150 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45824.t1 CHR5, Aspi01Gene45824 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50287.t1 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G040400.1 CHR5, Ceric.02G040400 not classified & original description: pacid=50584074... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Msp_g44223 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02499 CHR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g11799 CHR11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g15409 CHR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024260 CHR01, CHR1,... not classified & original description: CDS=245-1573 0.03 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 235 533
IPR001650 Helicase_C 556 669
No external refs found!