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  5. Tin_g12084

Tin_g12084


Description : associated component *(AFR) of histone deacetylase machineries & original description: none


Gene families : OG0001072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12084

Target Alias Description ECC score Gene Family Method Actions
Adi_g009990 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g042773 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aev_g06518 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ala_g03823 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Als_g21449 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aob_g17167 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aop_g04273 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Azfi_s0873.g090694 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Azfi_s3373.g115509 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.28G016000.1 Ceric.28G016000 associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Dcu_g47805 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ehy_g06090 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ehy_g09035 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
GSVIVT01019028001 No alias Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
LOC_Os02g57740.1 LOC_Os02g57740 associated component SAP30 of histone deacetylase machineries 0.01 OrthoFinder output from all 47 species
Lfl_g18360 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Lfl_g23067 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
MA_600107g0010 No alias associated component SAP30 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Msp_g01397 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Nbi_g00911 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Nbi_g13794 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ppi_g18771 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ppi_g30334 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ppi_g31450 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Tin_g10450 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Zm00001e031726_P001 Zm00001e031726 associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 172 219
No external refs found!