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  5. Tin_g12102

Tin_g12102 (APE1)


Aliases : APE1

Description : photosynthetic acclimation APE acclimation factor & original description: none


Gene families : OG0005042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g12102
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Adi_g042602 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Aev_g05820 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Ala_g01434 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Als_g04161 APE1 photosynthetic acclimation APE acclimation factor &... 0.09 OrthoFinder output from all 47 species
Aob_g11675 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Aop_g00474 APE1 photosynthetic acclimation APE acclimation factor &... 0.1 OrthoFinder output from all 47 species
Azfi_s0022.g016149 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Cba_g36758 APE1 photosynthetic acclimation APE acclimation factor &... 0.09 OrthoFinder output from all 47 species
Ceric.36G020000.1 APE1, Ceric.36G020000 photosynthetic acclimation APE acclimation factor &... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.155 APE1 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Cre16.g665250 APE1 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Dcu_g15090 APE1 photosynthetic acclimation APE acclimation factor &... 0.1 OrthoFinder output from all 47 species
Dde_g12570 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Ehy_g07374 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
GSVIVT01036442001 APE1 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Gb_11215 APE1 photosynthetic acclimation APE acclimation factor 0.06 OrthoFinder output from all 47 species
LOC_Os08g27010.1 APE1, LOC_Os08g27010 photosynthetic acclimation APE acclimation factor 0.1 OrthoFinder output from all 47 species
Len_g00377 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Lfl_g00668 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Mp1g12820.1 APE1 photosynthetic acclimation APE acclimation factor 0.04 OrthoFinder output from all 47 species
Msp_g00353 APE1 photosynthetic acclimation APE acclimation factor &... 0.11 OrthoFinder output from all 47 species
Nbi_g30376 APE1 photosynthetic acclimation APE acclimation factor &... 0.15 OrthoFinder output from all 47 species
Ore_g17711 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Pir_g12433 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Pir_g59760 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Pnu_g12820 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Pp3c4_3720V3.1 APE1, Pp3c4_3720 acclimation of photosynthesis to environment 0.02 OrthoFinder output from all 47 species
Ppi_g32168 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016876 APE1 photosynthetic acclimation APE acclimation factor &... 0.03 OrthoFinder output from all 47 species
Sam_g16456 No alias photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Smo117112 APE1 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Solyc03g034170.4.1 APE1, Solyc03g034170 photosynthetic acclimation APE acclimation factor 0.07 OrthoFinder output from all 47 species
Spa_g11785 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Zm00001e004293_P003 APE1, Zm00001e004293 photosynthetic acclimation APE acclimation factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021275 DUF2854 113 263
No external refs found!