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  5. Tin_g13248

Tin_g13248


Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g13248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00141060 PIF3, POC1,... External stimuli response.light.red/far red light.PIF... 0.03 OrthoFinder output from all 47 species
AT1G03040 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.02 OrthoFinder output from all 47 species
AT4G00050 UNE10 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02590 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G64980 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Adi_g055289 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058004 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g065834 LRL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109684 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06739 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07900 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26607 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33578 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03428 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18590 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40845 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05555 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08607 HEC1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20728 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14949.t1 LRL3, Aspi01Gene14949 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28459.t1 SPT, Aspi01Gene28459 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35112.t2 SPT, Aspi01Gene35112 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35709.t2 Aspi01Gene35709 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54623.t1 LRL3, Aspi01Gene54623 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044857 SPT bHLH-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Cba_g26289 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G032200.1 Ceric.11G032200 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.12G021200.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G024600.1 PIL5, PIF1,... bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G038400.1 Ceric.16G038400 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g23589 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25483 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09150 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13825 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31834 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01020814001 SRL2, PIF4, AtPIF4 External stimuli response.light.red/far red light.PIF... 0.03 OrthoFinder output from all 47 species
GSVIVT01021787001 UNE12 RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01025313001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01026056001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01028238001 PIF3, POC1, PAP3 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_05320 LRL3 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os03g58330.1 UNE12, LOC_Os03g58330 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g06900.1 SPT, LOC_Os06g06900 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os07g05010.2 PIL5, PIF1,... transcription factor (bHLH). PIF red/far-red light... 0.03 OrthoFinder output from all 47 species
LOC_Os09g31300.1 LOC_Os09g31300 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Len_g24250 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06729 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38961 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Lfl_g39067 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g09011 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24682 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35112 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03102 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19998 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43162 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g06619 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pir_g18085 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18900 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28386 No alias transcriptional co-activator *(FBH) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66268 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06946 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33476 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006234 No alias bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925 HEC2 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013028 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g34682 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sam_g50588 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52771 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo118904 ALC RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Smo439190 No alias External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
Solyc02g093280.2.1 SPT, Solyc02g093280 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc03g113560.4.1 Solyc03g113560 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc09g057710.4.1 Solyc09g057710 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Spa_g21312 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22560 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e005046_P003 PIL5, PIF1,... transcription factor (bHLH). PIF red/far-red light... 0.04 OrthoFinder output from all 47 species
Zm00001e009823_P002 LRL1, Zm00001e009823 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e016160_P003 SPT, Zm00001e016160 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e030725_P001 Zm00001e030725 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e037266_P001 Zm00001e037266 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 439 485
No external refs found!