Tin_g16956


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g16956

Target Alias Description ECC score Gene Family Method Actions
Adi_g005777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05108 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06921 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12498 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24397 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30597 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30900 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03235 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05107 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19046 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16552.t1 EMB2261, Aspi01Gene16552 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16559.t1 EMB2261, Aspi01Gene16559 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007907 No alias not classified & original description: CDS=160-2841 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035587 No alias not classified & original description: CDS=1-2688 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038161 EMB2758 not classified & original description: CDS=138-2465 0.05 OrthoFinder output from all 47 species
Azfi_s0098.g043939 EMB2758 not classified & original description: CDS=1-1746 0.06 OrthoFinder output from all 47 species
Azfi_s0201.g057560 No alias not classified & original description: CDS=1-2682 0.05 OrthoFinder output from all 47 species
Azfi_s0873.g090702 No alias not classified & original description: CDS=1-2778 0.04 OrthoFinder output from all 47 species
Azfi_s0908.g092257 No alias not classified & original description: CDS=1-1875 0.05 OrthoFinder output from all 47 species
Cba_g03349 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G041400.1 Ceric.01G041400 not classified & original description: pacid=50592429... 0.04 OrthoFinder output from all 47 species
Ceric.07G081900.1 Ceric.07G081900 not classified & original description: pacid=50627936... 0.05 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.03 OrthoFinder output from all 47 species
Ceric.20G040800.1 OTP86, Ceric.20G040800 not classified & original description: pacid=50566943... 0.04 OrthoFinder output from all 47 species
Ceric.30G037100.1 Ceric.30G037100 not classified & original description: pacid=50608918... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001038.5 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.03 OrthoFinder output from all 47 species
Dcu_g05681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08937 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22335 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07336 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g03880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g08196 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g27928 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04990 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19632 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g35599 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43020 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57955 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44475 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000644 No alias not classified & original description: CDS=1-2820 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001288 No alias not classified & original description: CDS=1-3081 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006214 No alias not classified & original description: CDS=115-2940 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018619 No alias not classified & original description: CDS=1-2157 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019669 OTP84 not classified & original description: CDS=1-1971 0.02 OrthoFinder output from all 47 species
Sam_g24878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g47343 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30407 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 124
IPR002885 Pentatricopeptide_repeat 230 276
IPR002885 Pentatricopeptide_repeat 128 174
IPR002885 Pentatricopeptide_repeat 334 379
No external refs found!