Tin_g17298 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g17298

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Adi_g018868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17868 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g37861 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07818 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24343 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24404 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07079 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03227 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14024 EMB2758 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g16327 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16531 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16794 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g18707 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g24180 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26859 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28413 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28533 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28684 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33538 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67765 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g68129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene18385.t1 OTP82, Aspi01Gene18385 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t2 Aspi01Gene67429 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0119.g046677 CRR2 not classified & original description: CDS=1-1557 0.05 OrthoFinder output from all 47 species
Cba_g76621 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.02G047700.1 Ceric.02G047700 not classified & original description: pacid=50586056... 0.05 OrthoFinder output from all 47 species
Dac_g04715 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g15083 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17225 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21425 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g25816 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25458 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g11341 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41204 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g03803 VAC1, ECB2, ATECB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g08399 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g15566 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38771 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g15155 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g30693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09778 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g23589 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g29398 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32640 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54672 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.08 OrthoFinder output from all 47 species
Smo126075 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.04 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17746 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 283 330
IPR002885 Pentatricopeptide_repeat 182 228
IPR002885 Pentatricopeptide_repeat 156 180
IPR002885 Pentatricopeptide_repeat 84 111
IPR002885 Pentatricopeptide_repeat 257 279
IPR002885 Pentatricopeptide_repeat 55 78
No external refs found!