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  5. Tin_g19659

Tin_g19659 (CIP111)


Aliases : CIP111

Description : not classified & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19659

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00071550 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.03 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.03 OrthoFinder output from all 47 species
Als_g14974 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19199 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G049300.1 CDC48B, Ceric.16G049300 platform ATPase CDC48 & original description:... 0.03 OrthoFinder output from all 47 species
Cre09.g398550 emb1354, CDC48C Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
MA_10427366g0010 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g20500.1 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Nbi_g27569 emb1354, CDC48C not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08291 emb1354, CDC48C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003605 CDC48B not classified & original description: CDS=1-351 0.04 OrthoFinder output from all 47 species
Smo89456 emb1354, CDC48C Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 906 951
IPR041569 AAA_lid_3 601 634
IPR003959 ATPase_AAA_core 753 883
IPR003959 ATPase_AAA_core 445 575
No external refs found!