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  5. Tin_g19702

Tin_g19702


Description : not classified & original description: none


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g19702

Target Alias Description ECC score Gene Family Method Actions
AT5G09880 No alias Splicing factor, CC1-like 0.04 OrthoFinder output from all 47 species
Adi_g055583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g41657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g62066 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene58033.t1 Aspi01Gene58033 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0162.g054145 No alias not classified & original description: CDS=1-1809 0.04 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.05 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24624 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_11513 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_39308 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g30370.1 LOC_Os10g30370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g18833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g26171 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g41477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60972 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g13992 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g35972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009589 No alias not classified & original description: CDS=346-2226 0.03 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g10141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 457 570
IPR000504 RRM_dom 365 435
IPR000504 RRM_dom 271 329
No external refs found!