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  5. Tin_g22408

Tin_g22408


Description : histone *(H3) & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g22408

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00250010 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
AT1G09200 No alias Histone superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G10980 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65360 No alias Histone superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g08007 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19848 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01931.t1 Aspi01Gene01931 histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene58554.t1 Aspi01Gene58554 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g01991 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02480 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31882 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31894 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_29027 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp3g07730.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g10730.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Msp_g17199 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g05547 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09484 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41472 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g20165 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.02 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc01g080600.4.1 Solyc01g080600 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.05 OrthoFinder output from all 47 species
Spa_g04339 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08360 No alias histone H3 variant *(CENH3) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g52114 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.03 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 51 150
No external refs found!